I have built my application on the JKI state machine and it works great out of LabVIEW (currently running 2014 but started with 2012). When I build the project and run it, by right clicking on it under Build Specifications and selecting Run, I get a different flow through the state machine.
I've written a little.vi to show me the current state and the future states. I hooked it into every JKI state machine case and ran the project. I then pressed the default OK button to exit the project and watched the flow through the states. Once this was working I built my project using